Note

Go to the end to download the full example code.

How to get started with the Spatiocoexistence modelΒΆ

This example demonstrates basic usage of the Spatiocoexistence model.

Necessary imports

from spatiocoexistence.model import SpatioCoexistenceModel

Initialize the model

model = SpatioCoexistenceModel()

Run the model for a certain amount of steps

model.cy_run(25)

Plot the Simulation Results

model.plot("test")
test, Cumulative k_ff, CI_CS distribution, Cumulative k_fh, CI_HS distribution, Reduced Growth, Reduced Survival, Reduced Recruitment, Species Abundance Distribution (SAD), Size distribution, Inventory
/builds/heinzej/CrowdingIndex/spatiocoexistence/py_tools.py:67: RuntimeWarning: divide by zero encountered in scalar divide
  ff = CI_CS_mean / CI_C_mean if CI_CS_mean != 0 else 0
/builds/heinzej/CrowdingIndex/spatiocoexistence/plotting.py:292: RuntimeWarning: divide by zero encountered in log
  np.log(k_ff[mask]),
/builds/heinzej/CrowdingIndex/spatiocoexistence/plotting.py:350: RuntimeWarning: divide by zero encountered in log
  np.log(sorted_k_ff),

Total running time of the script: (0 minutes 5.856 seconds)