Index _ | C | D | G | L | M | O | P | R | S | U _ __init__() (spatiocoexistence.model.SpatioCoexistenceModel method) C calculate_recruitment_rate() (in module spatiocoexistence.processes) calculate_reduced_growth() (in module spatiocoexistence.processes) calculate_survival_rate() (in module spatiocoexistence.processes) count_reproductives() (in module spatiocoexistence.tools) count_saplings() (in module spatiocoexistence.tools) create_initial_inventory() (in module spatiocoexistence.py_tools) crowding_indices() (in module spatiocoexistence.crowding) crowding_kdTree() (in module spatiocoexistence.crowding) cy_run() (spatiocoexistence.model.SpatioCoexistenceModel method) D display() (in module spatiocoexistence.plotting) G get_BA_and_k() (in module spatiocoexistence.py_tools) get_CI_CS_histogram() (in module spatiocoexistence.py_tools) get_CI_HS_histogram() (in module spatiocoexistence.py_tools) get_inventory() (spatiocoexistence.model.SpatioCoexistenceModel method) get_parameters() (in module spatiocoexistence.processes) get_params() (spatiocoexistence.model.SpatioCoexistenceModel method) get_recruitment_histogram() (in module spatiocoexistence.py_tools) get_reduced_growth_histogram() (in module spatiocoexistence.py_tools) get_SAD_histogram() (in module spatiocoexistence.py_tools) get_survival_histogram() (in module spatiocoexistence.py_tools) growth() (in module spatiocoexistence.processes) L log_likelihood() (in module spatiocoexistence.py_tools) M map_params() (in module spatiocoexistence.py_tools) mean_BA_abundance() (in module spatiocoexistence.processes) mean_count_size_class() (in module spatiocoexistence.py_tools) model_step() (in module spatiocoexistence.processes) module spatiocoexistence spatiocoexistence.crowding spatiocoexistence.model spatiocoexistence.plotting spatiocoexistence.processes spatiocoexistence.py_tools spatiocoexistence.tools mortality() (in module spatiocoexistence.processes) O optimize_parameters() (spatiocoexistence.model.SpatioCoexistenceModel method) P plot() (spatiocoexistence.model.SpatioCoexistenceModel method) plot_BA_dist() (in module spatiocoexistence.plotting) plot_inventory_on_ax() (in module spatiocoexistence.plotting) py_create_grid() (in module spatiocoexistence.tools) py_crowding_individual() (in module spatiocoexistence.crowding) R read_initial_inventory() (in module spatiocoexistence.py_tools) read_param_file() (in module spatiocoexistence.py_tools) recruitment() (in module spatiocoexistence.processes) reduced_growth() (in module spatiocoexistence.py_tools) reduced_recruitment() (in module spatiocoexistence.py_tools) run() (spatiocoexistence.model.SpatioCoexistenceModel method) run_with_plotting() (spatiocoexistence.model.SpatioCoexistenceModel method) S set_parameters() (in module spatiocoexistence.processes) size_class() (in module spatiocoexistence.py_tools) spatiocoexistence module spatiocoexistence.crowding module spatiocoexistence.model module spatiocoexistence.plotting module spatiocoexistence.processes module spatiocoexistence.py_tools module spatiocoexistence.tools module SpatioCoexistenceModel (class in spatiocoexistence.model) species_abundance() (in module spatiocoexistence.tools) species_abundance_distribution() (in module spatiocoexistence.py_tools) step() (spatiocoexistence.model.SpatioCoexistenceModel method) survival() (in module spatiocoexistence.py_tools) U update_params() (spatiocoexistence.model.SpatioCoexistenceModel method)